The demand for high quality tubers for the frozen processing industry has exerted increased pressure on producers to control diseases that can compromise tuber quality, including, C. coccodes and V. dahliae. Infection of potato plants by C. coccodes, the causal agent of black dot, can result in foliar necrosis, plant wilting, yield loss, tuber vascular discoloration and skin blemishes. Black dot of potato can originate from foliar-, seed- of soil-borne infections and, all plant tissues can be affected. The development of colonization in above- and below-ground plant tissues, from each inoculation/infestation source, was evaluated at two sites across two growing seasons. Colonization of potato tissue was detected at the first sampling date, even prior to plant emergence. While disease resulted from natural inoculum only, as inoculation/infestation sources increased, so did host colonization. Disease development also was greater in treatments with more than one site of inoculation/infestation. Overall, it was determined that stem tissue was colonized at greater frequency than root or stolon tissue. Infection of potato plants with V. dahliae, the causal agent of Verticillium wilt, occurs mainly through root contact with infested soil and can result in premature senescence as well as losses from decreased tuber yield and quality. Control of this pathogen is difficult and expensive and, therefore, efforts recently have increased towards the development of resistance. Resistance to V. dahliae in potato is thought to be multigenic, and therefore, quantification of the host:pathogen interaction is required to accurately define the level of resistance in a particular cultivar. Unfortunately, current methods used for quantification of V. dahliae in potato stems are time and labor intensive. A real-time duplex quantitative PCR assay was developed to simplify pathogen quantification to help breeding programs and researchers identify resistance in germplasm and cultivars. QPCR assays were validated using plant material from greenhouse and field trials, demonstrating specificity for V. dahliae, as well as sensitivity and accuracy when compared to traditional plating assays. Results from greenhouse and field evaluations also indicated that resistance is present among the eight russet-skinned cultivars evaluated in these studies.