Soybeans (Glycine max L. Merr.) are a symbiont of two beneficial associations: biological nitrogen fixation (BNF) with Bradyrhizobium japonicum, and arbuscular mycorrhizal fungi (AMF). Within the Northern Great Plains of the USA, iron deficiency chlorosis (IDC) of soybean is a yield-limiting factor. The effects of IDC on BNF and AMF are not well defined. This study was conducted to determine the effects of IDC on BNF and AMF. A laboratory study was performed to compare three methods of measuring ureide-N, a product of BNF in soybeans. Field studies in soybean were performed at three locations at eastern N011h Dakota. The experimental design was a factorial combination of three cultivars and three treatments. The three cultivars, in order of decreasing chlorosis susceptibility, were NuTech NT-0886, Roughrider Genetics RG 607, and Syngenta S01-C9 RR. The three treatments were control, Sorghum bicolor L. companion crop planted with the soybean seed, and FeEDDHA applied with the soybean seed. Chlorosis severity was the greatest and least for the NuTech and Syngenta cultivars, respectively. The FeEDDHA treatment decreased chlorosis severity. Ureide levels were abnormally high in plants severely stunted by JDC. The excess accumulation of ureides in IDC-stunted plants suggests that plant growth was reduced more than the rate of nitrogen fixation. The AMF population \vas at an adequate level at all locations and not affected by cultivar or treatment, in general. In the laboratory study, the Patterson et al. method had greater ureide concentrations due to the non-specific measuring of ammonium compounds compared to the Vogels and Van der Drift and Goos methods.