| dc.contributor.author | Bulathsinghalage, Chanaka Sampath Cooray | |
| dc.description.abstract | Chromatin interactions play increasingly important roles in three-dimensional genome organization and long-range gene regulation. Analyzing the three-dimensional structure of the plants is currently a growing field and we noticed that there is lack of computing resources on chromatin interactions for the plants. So, we are introducing a database of statistically significant chromatin interactions processed using Hi-C experimental approach. The users can search in the database using a set of genes or regions for a selected plant organism through a web browser and it lists down all the statistically significant chromatin interactions involved those genes or regions with the confidence scores, Gene Ontology information and pathway information. It serves as a computing resource for biologists and scientists who want to study plant genomes under the context of three-dimensional structure without any programming experience. | en_US |
| dc.publisher | North Dakota State University | en_US |
| dc.rights | NDSU policy 190.6.2 | en_US |
| dc.title | Building Plant 3D Genome Computing Resources | en_US |
| dc.type | Thesis | en_US |
| dc.date.accessioned | 2022-05-26T19:10:38Z | |
| dc.date.available | 2022-05-26T19:10:38Z | |
| dc.date.issued | 2021 | |
| dc.identifier.uri | https://hdl.handle.net/10365/32602 | |
| dc.rights.uri | https://www.ndsu.edu/fileadmin/policy/190.pdf | en_US |
| ndsu.degree | Master of Science (MS) | en_US |
| ndsu.college | Engineering | en_US |
| ndsu.department | Computer Science | en_US |
| ndsu.advisor | Liu, Lu | |
